How are GnomAD filters used within AlamutTM Visual Plus?

By default, Alamut^TM Visual Plus includes all available variants from GnomAD, irrespective of the filters or the filter cut-off.

There are three filters – the “PASS”, RF, and AC0 filters. Each of these filters has cut-offs defined by gnomAD, for both Exome and Genome data. If you only want to view variants that have passed through all the quality filters, tick the box “PASS only” on the gnomAD track for Alamut^TM Visual Plus, deciding if you want to see Exome or Genome data, or both.