SOPHiA DDM™
for Lymphoid Malignancies

Providing accurate genomic characterization of lymphoid neoplasms
Enhance your genomic profiling capabilities for lymphoid malignancies and gain insights to accelerate your clinical research with the SOPHiA DDM™ Platform.
OVERVIEW 

Reveal the drivers of lymphoid malignancies

Lymphoid neoplasms, encompassing lymphomas and some leukemias like chronic lymphocytic leukemia (CLL), are the most common type of blood cancer.1 With the rise of targeted therapies and personalized treatment strategies, identifying the right biomarkers amid the noise is crucial for accelerating clinical research and discovery.

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Transforming noisy data into insights

SOPHiA DDM™ for Lymphoid Malignancies empowers experts with high-quality, streamlined data analysis that boosts scientific breakthroughs and enhances decision-making.
Leverage the power of the SOPHiA DDM™ Platform to accurately detect, annotate, and prioritize complex variants, significantly reducing analysis time so you can swiftly advance your clinical research objectives.

Easily navigate complex analysis

SOPHiA DDM™ for Blood Cancers simplifies analysis of genomic drivers in hematological cancers using the trusted analytical performance and advanced features of the SOPHiA DDM™ platform.
Streamline raw genomic data analysis to precisely detect, annotate, and prioritize even the most complex blood cancer variants.

Accelerate the journey from data to insights

At SOPHiA GENETICS, we offer a complete portfolio of pipelines and end-to-end NGS applications (from sample to report) to fulfill your needs and better assess key biomarkers involved in myeloid and lymphoid neoplasms, and essential for detection and quantification of measurable residual disease (MRD). 

SOPHiA DDM™ Lymphoma Solution

The SOPHiA DDM™ Lymphoma Solution (LYS) is a comprehensive capture-based application designed to detect and analyze genomic alterations on 54 genes associated with various B- and T-cell lymphomas.

SOPHiA DDM™ Community CLL Solution

The SOPHiA DDM™ Community CLL Clonality Solution is a targeted capture-based application to identify variants in 23 key genes, along with IGH rearrangements, associated with chronic lymphocytic leukemia (CLL).
KEY FEATURES

Gain a complete view of Lymphoid Malignancies

Go from sample to report with SOPHiA DDM™ for Lymphoid Malignancies. Leverage our flexible platform that offers a comprehensive range of guideline-driven, ready-to-use, and customizable next-generation sequencing (NGS)-based applications to enhance your genomic profiling capabilities.
Detect the unique immunoglobulin gene heavy chain (IGH) rearrangement of the V(D)J region in one assay with our optimized probe capture. This enables further characterizations following international recommendations.
With an optimized probe design and the advanced analytical capabilities of the SOPHiA DDM™ Platform, hard to detect variants in GC-rich and complex regions such as EGR2, NFKBI, and IGH locus are assessed.
Accelerate variant interpretation with intuitive filters and machine learning-based prioritization. Explore evidence-based insights in just a few clicks using the fully integrated OncoPortal™ Knowledge Base add-on, streamlining your workflow for faster, more accurate results.
WORKFLOW

Charting the course to solve lymphoid cases

Streamline your analysis with an accurate and adaptable workflow.
Flexible and scalable library preparation

Use one universal, automated protocol for robust sequencing across applications.

Accurate variant detection and annotation

Precisely detect SNVs, Indels, and CNVs with our proprietary algorithms.

Advanced variant interpretation

Match cancer genomic profiles to the most up-to date information with OncoPortal™ Knowledge Base.

Customizable reporting

Quickly prepare comprehensive reports tailored to your needs.

You won’t be left alone.
Enjoy comprehensive support at every step through the SOPHiA DDM™ MaxCare Program, making in-house adoption a breeze.
WORKFLOW

A wave of insights for every laboratory

Streamline your blood cancer analysis workflow from sample to comprehensive, customized report.
Flexible and scalable library preparation
Rely on robust sequencing across multiple applications using one universal and automated protocol.
Advanced variant interpretation
Match tumor molecular profiles with clinical associations and available clinical
Accurate variant detection and annotation
Precisely detect challenging genomic variants thanks to the power of our proprietary algorithms.
Customizable reporting
Quickly prepare comprehensive reports tailored to your needs.
ANALYTICS

Turning data into insights—it’s in our blood

Gain deeper insights into lymphoid malignancies by accurately assessing even the most challenging molecular biomarkers with the advanced power of SOPHiA DDM™'s proprietary algorithms.
CUMIN™: Precise molecular barcoding
Accurately identify single nucleotide variants (SNVs) and small insertions/deletions (Indels) in lymphoid malignancies, even in challenging samples. PEPPER™’s sophisticated algorithm differentiate true signal from noise, providing you with reliable results to guide your decisions.
Technology Principles
CUMIN™: Precise molecular barcoding
Gain crucial insights into the genomic alterations driving lymphoid malignancies with MUSKAT™. Our copy number variation (CNV) calling algorithm adapts to experimental conditions and performs double normalization to call CNVs missed by other tools.
Technology Principles
CUMIN™: Precise molecular barcoding

Confidently interpret the significance of genomic variants in lymphoid malignancies with MOKA™. Our robust annotation algorithm draws from curated databases and uses de novo analytics to provide insights on the likely effects and pathogenicity of genomic variants.

Technology Principles
CUMIN™: Precise molecular barcoding
Accurately identify single nucleotide variants (SNVs) and small insertions/deletions (indels) in lymphoid malignancies, even in challenging samples. PEPPER™’s sophisticated algorithms differentiate true signal from noise, providing you with reliable results to guide your decisions.
Learn More About Sophia DDM™

Explore IGH and IGL rearrangement

SOPHiA GENETICS worked with IDIBAPS to enable IgCaller companion software to be used with SOPHiA DDM™ Community CLL Clonality Solution.
IgCaller annotates V(D)J-gene recombination, somatic hypermutation status, and clinically relevant CLL stereotyped subsets. The resulting sequences are compatible with IMGT/V-QUEST for confirming gene and allele annotation, functionality, and IGHV mutation status following ERIC guidelines, if needed.
Streamline raw genomic data analysis to precisely detect, annotate, and prioritize even the most complex blood cancer variants.

SOPHiA DDM™ for Lymphoma Malignances

Accurately identify causative variants with SOPHiA DDM™.

Comparison Table Heading

  SOPHiA DDM™ Lymphoma Solution (LYS) - RUO SOPHiA DDM™ Community CLL Clonality Solution - RUO
Associated disorders B- and T-cell lymphomas such as diffuse large B-cell, follicular, mantle cell, and Burkitt lymphomas Chronic Lymphocytic Leukaemia
Genes 54 genes 23 genes + IGH rearrangement
Target Region Size 118 Kb 48 Kb
Key Biomarkers CREBBP, EP300, EZH2, MEF2B, MYD88, MYC, BRAF IGH rearrangement, TP53, BTK, BCL2, NOTCH1
Sample Type FFPE, blood, and bone marrow Blood and bone marrow
Starting Material 50 ng DNA 200 ng DNA
Sequencer Compatibility Illumina MiSeq® and NextSeq® Illumina MiSeq®, NextSeq® and MiniSeq™
Library Preparation Time 1.5 days 1.5 days
Analysis Time from FASTQ 4 hours 4 hours
Detected Variants SNVs
Indels
Gene amplifications (47 genes)
SNVs
Indels
CNVs

Community Solutions for Blood Cancers

Accelerate your analysis with expertly-designed NGS-based applications.

“Through this collaboration, we aim to enable the widespread application of precision medicine in oncology across Africa, and thus contributing to the improvement of patient outcomes across the African continent.

We believe our scientific expertise, combined with AI-enabled technologies and data-driven solutions enabled by SOPHiA GENETICS, presents a unique opportunity to fundamentally transform the journey of cancer patients through non-invasive cancer analysis, predictive genomic testing, and effective precision medicine”.

Abasi Ene-Obong, PhD.

Founder, Syndicate Bio

References

  1. Sung H, Ferlay J, Siegel RL, Laversanne M, Soerjomataram I, Jemal A, et al. Global cancer statistics 2020: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries. CA Cancer J Clin. 2021;71(3):209–49. http://dx.doi.org/10.3322/caac.21660

SOPHiA GENETICS products are for Research Use Only and not for use in diagnostic procedures unless specified otherwise.

SOPHiA DDM™ Dx Hereditary Cancer Solution, SOPHiA DDM™ Dx RNAtarget Oncology Solution and SOPHiA DDM™ Dx Homologous Recombination Deficiency Solution are available as CE-IVD products for In Vitro Diagnostic Use in the European Economic Area (EEA), the United Kingdom and Switzerland. SOPHiA DDM™ Dx Myeloid Solution and SOPHiA DDM™ Dx Solid Tumor Solution are available as CE-IVD products for In Vitro Diagnostic Use in the EEA, the United Kingdom, Switzerland, and Israel. Information about products that may or may not be available in different countries and if applicable, may or may not have received approval or market clearance by a governmental regulatory body for different indications for use. Please contact us at [email protected] to obtain the appropriate product information for your country of residence.

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SOPHiA DDM™ Overview
Unlocking Insights, Transforming Healthcare
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SOPHiA DDM™ for Genomics

Oncology 

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