Can Alamut™Visual Plus visualize reads (BAM files) from the SOPHiA DDM™ Whole Exome Sequencing Solution (WES)?

It is possible to click on the “Alamut” button in the SOPHiA DDMTM Platform, or to download BAM files from WES (or from targeted panels or even from whole-genome sequencing). In AlamutTM Visual Plus, the BAM file will be loaded by segment and visualized by gene due to the index file (.bai) associated with the BAM file. The BAM file will not be entirely loaded for all genes at once, meaning that the BAM file can be of any size. 

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